Well, here it is!!!!! Once I opened the wiring loom on the door with the affected window this is what I found, 6 completely broken wires and another 4 with the insulation frayed. This is caused by the continual movement of the wires when you open and close the doors, mine is an 04 plate. A bit of soldering and crimping will fix the problem (search the forum, there is a guide)and all of the electrical gremlins are gone now that I have isolated all of the broken connections. This is 99% what is causing your window problem and you can expect to see more electrical gremlins as the broken wires continue to short, start with the wiring loom that runs from the door pillar into the door with the affected window. Apart from being a pain in the rear, electrical shorts can lead to fire and that is not good. Get this looked at if you cannot do it yourself.